16S rRNA and multilocus phylogenetic analysis of the iron oxidizing acidophiles of the acidiferrobacteraceae family

Issotta Francisco, Paulo C. Covarrubias, Moya Beltrán Ana, Bellenberg Sӧren, Thyssen Christian, Sand Wolfgang, Nuñez Harold, Mena Cristóbal, David S. Holmes, Quatrini Raquel, Vera Mario

Resultado de la investigación: Research - revisión exhaustivaConference contribution

Resumen

The family Acidiferrobacteraceae (order Acidiferrobacterales) currently contains three genera of chemolithoautotrophs: Sulfuricaulis (2016), Sulfurifustis (2015) and Acidiferrobacter (2011). While the two former are neutrophilic sulfur oxidizers isolated from lake sediments in Japan, the latter is an extremely acidophilic, moderately osmophilic, thermotolerant iron/sulfur oxidizer known to occur in macroscopic streamers in Rio Tinto, Spain and in acid waters worldwide. The type strains of both Sulfuricaulis limnicola (HA5T) and Sulfurifustis variabilis (skN76T) have been sequenced, and the draft genome of the ZJ isolate of Acidiferrobacter thiooxydans (MDCF01) has recently been deposited in public databases. Despite this fact, little evidence on the genomic diversity and evolution of this group has been presented so far. Using comparative genomic analyses and phylogenetic reconstruction strategies, we explored the evolutionary information contained in the available genome sequences to shed light on the taxonomic status of a novel isolate of the genus Acidiferrobacter (SP-III/3; DSM 27195).

IdiomaEnglish
Título de la publicación alojada22nd International Biohydrometallurgy Symposium
EditorialTrans Tech Publications Ltd
Páginas339-343
Número de páginas5
Volumen262 SSP
ISBN (versión impresa)9783035711806
DOI
EstadoPublished - 2017
Evento22nd International Biohydrometallurgy Symposium, 2017 - Freiberg, Germany
Duración: 24 sep 201727 sep 2017

Series de publicaciones

NombreSolid State Phenomena
Volumen262 SSP
ISSN (electrónico)1662-9779

Conference

Conference22nd International Biohydrometallurgy Symposium, 2017
PaísGermany
CiudadFreiberg
Período24/09/1727/09/17

Huella dactilar

oxidizers
genome
sulfur
iron
Sulfur
Iron
Genes
draft
Spain
lakes
Japan
sediments
acids
water
Lakes
Sediments
Acids
Water

Keywords

    ASJC Scopus subject areas

    • Atomic and Molecular Physics, and Optics
    • Materials Science(all)
    • Condensed Matter Physics

    Citar esto

    Francisco, I., Covarrubias, P. C., Ana, M. B., Sӧren, B., Christian, T., Wolfgang, S., ... Mario, V. (2017). 16S rRNA and multilocus phylogenetic analysis of the iron oxidizing acidophiles of the acidiferrobacteraceae family. En 22nd International Biohydrometallurgy Symposium (Vol. 262 SSP, pp. 339-343). (Solid State Phenomena; Vol. 262 SSP). Trans Tech Publications Ltd. DOI: 10.4028/www.scientific.net/SSP.262.339
    Francisco, Issotta ; Covarrubias, Paulo C. ; Ana, Moya Beltrán ; Sӧren, Bellenberg ; Christian, Thyssen ; Wolfgang, Sand ; Harold, Nuñez ; Cristóbal, Mena ; Holmes, David S. ; Raquel, Quatrini ; Mario, Vera. / 16S rRNA and multilocus phylogenetic analysis of the iron oxidizing acidophiles of the acidiferrobacteraceae family. 22nd International Biohydrometallurgy Symposium. Vol. 262 SSP Trans Tech Publications Ltd, 2017. pp. 339-343 (Solid State Phenomena).
    @inbook{211c53559f4f42f1ab4532a0d66ff1bd,
    title = "16S rRNA and multilocus phylogenetic analysis of the iron oxidizing acidophiles of the acidiferrobacteraceae family",
    abstract = "The family Acidiferrobacteraceae (order Acidiferrobacterales) currently contains three genera of chemolithoautotrophs: Sulfuricaulis (2016), Sulfurifustis (2015) and Acidiferrobacter (2011). While the two former are neutrophilic sulfur oxidizers isolated from lake sediments in Japan, the latter is an extremely acidophilic, moderately osmophilic, thermotolerant iron/sulfur oxidizer known to occur in macroscopic streamers in Rio Tinto, Spain and in acid waters worldwide. The type strains of both Sulfuricaulis limnicola (HA5T) and Sulfurifustis variabilis (skN76T) have been sequenced, and the draft genome of the ZJ isolate of Acidiferrobacter thiooxydans (MDCF01) has recently been deposited in public databases. Despite this fact, little evidence on the genomic diversity and evolution of this group has been presented so far. Using comparative genomic analyses and phylogenetic reconstruction strategies, we explored the evolutionary information contained in the available genome sequences to shed light on the taxonomic status of a novel isolate of the genus Acidiferrobacter (SP-III/3; DSM 27195).",
    keywords = "Acidiferrobacter thiooxydans. Acidiferrobacter SP-III/3, Comparative genomics, Phylogenetic analysis",
    author = "Issotta Francisco and Covarrubias, {Paulo C.} and Ana, {Moya Beltrán} and Bellenberg Sӧren and Thyssen Christian and Sand Wolfgang and Nuñez Harold and Mena Cristóbal and Holmes, {David S.} and Quatrini Raquel and Vera Mario",
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    Francisco, I, Covarrubias, PC, Ana, MB, Sӧren, B, Christian, T, Wolfgang, S, Harold, N, Cristóbal, M, Holmes, DS, Raquel, Q & Mario, V 2017, 16S rRNA and multilocus phylogenetic analysis of the iron oxidizing acidophiles of the acidiferrobacteraceae family. En 22nd International Biohydrometallurgy Symposium. vol.. 262 SSP, Solid State Phenomena, vol.. 262 SSP, Trans Tech Publications Ltd, pp. 339-343, 22nd International Biohydrometallurgy Symposium, 2017, Freiberg, Germany, 24/09/17. DOI: 10.4028/www.scientific.net/SSP.262.339

    16S rRNA and multilocus phylogenetic analysis of the iron oxidizing acidophiles of the acidiferrobacteraceae family. / Francisco, Issotta; Covarrubias, Paulo C.; Ana, Moya Beltrán; Sӧren, Bellenberg; Christian, Thyssen; Wolfgang, Sand; Harold, Nuñez; Cristóbal, Mena; Holmes, David S.; Raquel, Quatrini; Mario, Vera.

    22nd International Biohydrometallurgy Symposium. Vol. 262 SSP Trans Tech Publications Ltd, 2017. p. 339-343 (Solid State Phenomena; Vol. 262 SSP).

    Resultado de la investigación: Research - revisión exhaustivaConference contribution

    TY - CHAP

    T1 - 16S rRNA and multilocus phylogenetic analysis of the iron oxidizing acidophiles of the acidiferrobacteraceae family

    AU - Francisco,Issotta

    AU - Covarrubias,Paulo C.

    AU - Ana,Moya Beltrán

    AU - Sӧren,Bellenberg

    AU - Christian,Thyssen

    AU - Wolfgang,Sand

    AU - Harold,Nuñez

    AU - Cristóbal,Mena

    AU - Holmes,David S.

    AU - Raquel,Quatrini

    AU - Mario,Vera

    PY - 2017

    Y1 - 2017

    N2 - The family Acidiferrobacteraceae (order Acidiferrobacterales) currently contains three genera of chemolithoautotrophs: Sulfuricaulis (2016), Sulfurifustis (2015) and Acidiferrobacter (2011). While the two former are neutrophilic sulfur oxidizers isolated from lake sediments in Japan, the latter is an extremely acidophilic, moderately osmophilic, thermotolerant iron/sulfur oxidizer known to occur in macroscopic streamers in Rio Tinto, Spain and in acid waters worldwide. The type strains of both Sulfuricaulis limnicola (HA5T) and Sulfurifustis variabilis (skN76T) have been sequenced, and the draft genome of the ZJ isolate of Acidiferrobacter thiooxydans (MDCF01) has recently been deposited in public databases. Despite this fact, little evidence on the genomic diversity and evolution of this group has been presented so far. Using comparative genomic analyses and phylogenetic reconstruction strategies, we explored the evolutionary information contained in the available genome sequences to shed light on the taxonomic status of a novel isolate of the genus Acidiferrobacter (SP-III/3; DSM 27195).

    AB - The family Acidiferrobacteraceae (order Acidiferrobacterales) currently contains three genera of chemolithoautotrophs: Sulfuricaulis (2016), Sulfurifustis (2015) and Acidiferrobacter (2011). While the two former are neutrophilic sulfur oxidizers isolated from lake sediments in Japan, the latter is an extremely acidophilic, moderately osmophilic, thermotolerant iron/sulfur oxidizer known to occur in macroscopic streamers in Rio Tinto, Spain and in acid waters worldwide. The type strains of both Sulfuricaulis limnicola (HA5T) and Sulfurifustis variabilis (skN76T) have been sequenced, and the draft genome of the ZJ isolate of Acidiferrobacter thiooxydans (MDCF01) has recently been deposited in public databases. Despite this fact, little evidence on the genomic diversity and evolution of this group has been presented so far. Using comparative genomic analyses and phylogenetic reconstruction strategies, we explored the evolutionary information contained in the available genome sequences to shed light on the taxonomic status of a novel isolate of the genus Acidiferrobacter (SP-III/3; DSM 27195).

    KW - Acidiferrobacter thiooxydans. Acidiferrobacter SP-III/3

    KW - Comparative genomics

    KW - Phylogenetic analysis

    UR - http://www.scopus.com/inward/record.url?scp=85028967531&partnerID=8YFLogxK

    U2 - 10.4028/www.scientific.net/SSP.262.339

    DO - 10.4028/www.scientific.net/SSP.262.339

    M3 - Conference contribution

    SN - 9783035711806

    VL - 262 SSP

    T3 - Solid State Phenomena

    SP - 339

    EP - 343

    BT - 22nd International Biohydrometallurgy Symposium

    PB - Trans Tech Publications Ltd

    ER -

    Francisco I, Covarrubias PC, Ana MB, Sӧren B, Christian T, Wolfgang S y otros. 16S rRNA and multilocus phylogenetic analysis of the iron oxidizing acidophiles of the acidiferrobacteraceae family. En 22nd International Biohydrometallurgy Symposium. Vol. 262 SSP. Trans Tech Publications Ltd. 2017. p. 339-343. (Solid State Phenomena). Disponible desde, DOI: 10.4028/www.scientific.net/SSP.262.339